CHEN Jin, LI Jing, ZHANG Linxi, JIANG Zhouting, XIA Agen, YE Gaoxiang, ZHAO Delu. A STUDY OF RESIDUE-RESIDUE CONTACTS IN GLOBULAR PROTEIN MOLECULES[J]. Acta Polymerica Sinica, 2003,(2):171-174.
CHEN Jin, LI Jing, ZHANG Linxi, JIANG Zhouting, XIA Agen, YE Gaoxiang, ZHAO Delu. A STUDY OF RESIDUE-RESIDUE CONTACTS IN GLOBULAR PROTEIN MOLECULES[J]. Acta Polymerica Sinica, 2003,(2):171-174.DOI:
The residue-residue contacts in 61 globular protein molecules were studied by using CSU software.The aim is to find the ability of forming the short-range and long-range residue-residue contacts for several residues.It is found that it is easy to form the long-range residue-residue contacts for Leu
Val
Ile
Met
Phe
Tyr
Cys
Trp residues
and it is difficult to form the long-range residue-residue contacts for Glu
Gln
Asp
Asn
Lys
Ser
Arg
Pro residues.The residuce are called residues hydrophobic (H) and hydrophilic (P) residues
respectively
and the other residues is called neutral residue (N).The average number of long-range contacts per residue is 6.03
4.43 and 3.64 for H
N and P residues respectively.However
the average number of short-range contacts per residue ranges from 2.34 to 2.85
and it is almost no difference among those residues in forming the short-range contacts. Our research may provide some insights into the stability and folding of protein molecules.